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<div class="title">Class Hierarchy</div>  </div>
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<p><a href="inherits.html">Go to the graphical class hierarchy</a></p>
This inheritance list is sorted roughly, but not completely, alphabetically:</div><div class="directory">
<div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span>]</div><table class="directory">
<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudaaligner_1_1Aligner.html" target="_self">claragenomics::cudaaligner::Aligner</a></td><td class="desc"></td></tr>
<tr id="row_1_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudaaligner_1_1Alignment.html" target="_self">claragenomics::cudaaligner::Alignment</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1cudaaligner_1_1Alignment.html" title="Alignment - Object encapsulating an alignment between 2 string.">Alignment</a> - Object encapsulating an alignment between 2 string </td></tr>
<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1cudamapper_1_1Anchor.html" target="_self">claragenomics::cudamapper::Anchor</a></td><td class="desc"></td></tr>
<tr id="row_3_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1cudamapper_1_1ArrayBlock.html" target="_self">claragenomics::cudamapper::ArrayBlock</a></td><td class="desc"></td></tr>
<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudapoa_1_1Batch.html" target="_self">claragenomics::cudapoa::Batch</a></td><td class="desc"></td></tr>
<tr id="row_5_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1cudapoa_1_1Entry.html" target="_self">claragenomics::cudapoa::Entry</a></td><td class="desc">A structure to represent a sequence entry </td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1io_1_1FastaParser.html" target="_self">claragenomics::io::FastaParser</a></td><td class="desc"></td></tr>
<tr id="row_7_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1io_1_1FastaSequence.html" target="_self">claragenomics::io::FastaSequence</a></td><td class="desc">A structure to hold details of a single FASTA entry </td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_8_" class="arrow" onclick="toggleFolder('8_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1Graph.html" target="_self">claragenomics::Graph</a></td><td class="desc">Object representing a generic graph structure </td></tr>
<tr id="row_8_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1DirectedGraph.html" target="_self">claragenomics::DirectedGraph</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1DirectedGraph.html" title="DirectedGraph Object representing a directed graph structure.">DirectedGraph</a> Object representing a directed graph structure </td></tr>
<tr id="row_8_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1UndirectedGraph.html" target="_self">claragenomics::UndirectedGraph</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1UndirectedGraph.html" title="UndirectedGraph Object representing an undirected graph structure.">UndirectedGraph</a> Object representing an undirected graph structure </td></tr>
<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudamapper_1_1Index.html" target="_self">claragenomics::cudamapper::Index</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1cudamapper_1_1Index.html" title="Index - manages mapping of (k,w)-kmer-representation and all its occurences.">Index</a> - manages mapping of (k,w)-kmer-representation and all its occurences </td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudamapper_1_1Matcher.html" target="_self">claragenomics::cudamapper::Matcher</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1cudamapper_1_1Matcher.html" title="Matcher - base matcher.">Matcher</a> - base matcher </td></tr>
<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1cudamapper_1_1Overlap.html" target="_self">claragenomics::cudamapper::Overlap</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudamapper_1_1Overlapper.html" target="_self">claragenomics::cudamapper::Overlapper</a></td><td class="desc"></td></tr>
<tr id="row_13_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structclaragenomics_1_1PairHash.html" target="_self">claragenomics::PairHash</a></td><td class="desc"></td></tr>
<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1scoped__device__switch.html" target="_self">claragenomics::scoped_device_switch</a></td><td class="desc">A class to switch the CUDA device for the current scope using RAII </td></tr>
<tr id="row_15_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudamapper_1_1Sequence.html" target="_self">claragenomics::cudamapper::Sequence</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1cudamapper_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> - represents an individual read (name, DNA nucleotides etc) </td></tr>
<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classclaragenomics_1_1cudamapper_1_1SketchElement.html" target="_self">claragenomics::cudamapper::SketchElement</a></td><td class="desc"><a class="el" href="classclaragenomics_1_1cudamapper_1_1SketchElement.html" title="SketchElement - Contains integer representation, position, direction and read id of a kmer.">SketchElement</a> - Contains integer representation, position, direction and read id of a kmer </td></tr>
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